Introduction & Background
Formally trained in botony and molecular biology with a sprinkling of computer science and practically trained in web development and plant breeding, I often feel like I'm straddling two worlds and belong in neither of them, which is just to say, I am a Bioinformaticist ;-). People either know me as the lead developer of KnowPulse or one of the core developers of Tripal --luckily they are both an end to the same mean.
Scientific Presentations
| Role | Conference | Date |
|---|---|---|
| Tripal Database Network and Initiatives | ||
| Workshop Organizer | Plant and Animal Genome (PAG) Conference | Jan 2017 |
| Tripal User Meeting & Hackathon | ||
| Organizer | Tripal Developer Community Meeting | Jan 2017 |
| Extending Tripal for Community-Based Management and Distribution of Genotypic and Phenotypic Data | ||
| Oral Presentatio | Plant and Animal Genome (PAG) Conference | Jan 2017 |
| Tripal Database Network and Initiatives | ||
| Workshop Organizer | Plant and Animal Genome (PAG) Conference | Jan 2016 |
| Tripal Codefest | ||
| Organizer | Tripal Developer Community Meeting | Jan 2016 |
| Tripal v2: An Overview | ||
| Oral Presentation | Plant and Animal Genome (PAG) Conference | Jan 2016 |
| Tripal (Community Update) | ||
| Oral Presentation | GMOD Conference | Jun 2016 |
| Extending Tripal for Specialized Display and Management of Diversity and Breeding Data | ||
| Oral Presentation | Plant and Animal Genome (PAG) Conference | Jan 2015 |
| KnowPulse: A Breeder-Focused Web Portal That Integrates Genetics and Genomics of Pulse Crops with Model Genomes | ||
| Oral Presentation | Plant and Animal Genome (PAG) Conference | Jan 2015 |
| Tripal (Community Update) | ||
| Oral Presentation | Plant and Animal Genome (PAG) Conference | Jan 2014 |
| Tripal (Community Update) | ||
| Oral Presentation | GMOD Conference | Jan 2014 |
| Tripal (Community Update) | ||
| Oral Presentation | GMOD Conference | Jan 2012 |
Peer-reviewed Publications
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture
Lisa Harper Jacqueline Campbell Ethalinda K S Cannon Sook Jung Monica Poelchau Ramona Walls, et. al. Database, Volume 2018, 1 January 2018, bay088
Neha Gujaria-Verma, Larissa Ramsay, Andrew G. Sharpe, Lacey-Anne Sanderson, Daniel G. Debouck, Bunyamin Tar’an and Kirstin E. Bett. BMC Genomics (2016) 17:239.
Anoop Sindhu, Larissa Ramsay, Lacey-Anne Sanderson, Robert Stonehouse, Rong Li, Janet Condie, Arun S. K. Shunmugam, Yong Liu, Ambuj B. Jha, Marwan Diapari, Judith Burstin, Gregoire Aubert, Bunyamin Tar’an, Kirstin E. Bett, Thomas D. Warkentin, Andrew G. Sharpe. Theor Appl Genet (2014) 127: 2225.
Lacey-Anne Sanderson, Stephen P. Ficklin, Chun-Huai Cheng, Sook Jung, Frank A. Feltus, Kirstin E. Bett and Dorrie Main. Oxford Database (2013) bat075
Andrew G Sharpe, Larissa Ramsay, Lacey-Anne Sanderson, Michael J Fedoruk, Wayne E Clarke, Rong Li, Sateesh Kagale, Perumal Vijayan, Albert Vandenberg and Kirstin E Bett. BMC Genomics (2013) 14:192.
Sook Jung, Naama Menda, Seth Redmond, Robert M. Buels, Maren Friesen, Yuri Bendana, Lacey-Anne Sanderson, Hilmar Lapp, Taein Lee, Bob MacCallum, Kirstin E. Bett, Scott Cain, Dave Clements, Lukas A. Mueller and Dorrie Main. Oxford Database (2011) bar051
Stephen P. Ficklin, Lacey-Anne Sanderson, Chun-Huai Cheng, Margaret E. Staton, Taein Lee, Il-Hyung Cho, Sook Jung, Kirstin E. Bett and Doreen Main. Oxford Database (2011) bar044
Formal Education
| Certification | Subject | Date Completed |
|---|---|---|
| Bachelor of Science (B.Sc.) Honours | Major: Biology, Specialized in Molecular Biology & Botany | 2009 |
| Honours Certificate in Science (B.Sc. equivalent) | Major: Bioinformatics | 2009 |
Work Experience
Bioinformatics Research Assistant
Lead developement and maitenance of KnowPulse, a breeder-friendly pulse crop web portal and participate in development of Tripal, the software powering KnowPulse. Provide bioinformatics support and advice to the members of Pulse Group, and perform community outreach for Tripal including presenting at conferences, leading workshops and consulting with other projects on Tripal functionality/integration.
Bioinformatics Research Technician
Design of programs to aid in research and implementation of a database web portal for organization, storage and utilization of sequence and germplasm data.
Teaching Assistant
BIOL 202 Introductory Botany
Summer Research Student
Design and management of an individual project on the ribosomal protein S15aC
Teaching Assistant
BIOL 331 Plant Physiology
Summer Research Student
Assisting lab graduate students with molecular biology techniques
Lacey-Anne Sanderson
Organizations
Primary Skills
PortgreSQL
Drupal
PHP
Javascript
Tripal